(optional) Explicitly set the contrast -l (-logcenter=)
(optional) boolean argument, moves the array annotations below the array tree -c (-contrast=) (optional) Explicitly set the width of the gene tree. (optional) Explicitly set the height of the array tree. Example: -g 0 to include the first column of array annotations in the cdt file. (optional) Comma separated list of gene annotations to include in output. Example: -a 0 to include the first row of array annotations in the cdt file. (optional) Comma separated list of array annotations to include in output. (optional) set pixel scaling as pixels for each array x pixels for each gene, or 1x10 for one pixel per array column and 10 pixels for each gene row, if you wanted to have gene names in the output -a (-arrayHeaders=) (optional) set output format, either 'png', 'gif' or 'ps' (defaults to extension of output file) -s (-scaling=) (required) Filename to store image output in -f (-=)
#Graphicconverter first aid app mac os x#
Troubleshooting Installation Problems Unzipping Distribution Running Launcher Files Url Related Issues Url Linking in Windows Url Linking on OSX Export Problems Export of Gene Summary Giant Postscript Files Giant GIF Files Miscellaneous Problems Out of Memory Displaying Annotations Switching browsers Strange drawing of dendrogram branch lines Crashing on Mac Os X Bibliographyĭendrogram export options -o (-output=)
Feature Reference Command Line Options Useful JVM Arguments Main Program options Dendrogram export options Persistence Document Settings Global Settings Presets Url Presets Dendrogram Color Presets Karyoscope Coordinates Presets Settings Url Settings Dendrogram Font Settings Dendrogram Pixel Settings Karyoscope Coordinates Settings Karyoscope Averaging Settings Export Export of Selected Genes and Data to Tab-Delimited Text Export of Dendrograms Bounding Box Java Treeview Modes Dendrogram Informational Panels Selection in DendrogramĬoloring Gene Names and Array Names Scatterplot Creating a Scatterplot Karyoscope Cursor hinting in Karyoscope Zooming in Karyoscope Selection Highlighting in Karyoscope Alignment File Formats Minimal File Requirements Generalized CDT File Coordinates Files for Karyoscope Tree Files 3. Installation and Introduction General Instructions Overview of Java TreeView Getting Started Selection in Java TreeView 2. Table of Contents READ THIS FIRST Acknowledgements 1.
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